SRR3128187.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128187.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1578799
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36871	2.3353827814686987	No Hit
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	2921	0.18501405182040273	No Hit
CGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT	2548	0.16138849847257314	No Hit
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	2417	0.1530910521225311	Illumina Single End Adapter 1 (95% over 21bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2231	0.14130994509117373	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1911	0.12104137385442984	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTT	1861	0.11787440959868863	No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	1814	0.11489746319829186	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	10830	87.567085	1
TAGGGCA	680	78.92406	4
GAATAGG	915	78.22263	1
ACGGGTA	140	77.34161	4
GGTAAGG	1010	76.92588	1
GTAGGGC	600	75.32401	3
AGGGATG	2645	72.856705	5
ATAGGGA	1480	72.20671	3
GTAGGGT	535	72.15618	3
GAGGGAT	2005	71.61416	4
TACGGGT	145	71.42793	3
TAGGGTA	530	70.172134	4
AGTAGGG	2345	70.06418	2
AGGGTAC	780	69.899605	5
CGTAGGG	485	68.91759	2
TAGAGGG	2840	68.4613	2
AAGGGAT	2610	68.361595	4
AGGGCAT	1425	68.2758	5
AGAGGGA	3630	68.0873	3
AAGGGAC	1545	67.95006	4