SRR3128180.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128180.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2040094
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27270	1.3367031126997089	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3869	0.18964812405702874	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCCTGTAAC	3745	0.18356997275615733	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	3720	0.18234453902614292	Illumina PCR Primer Index 2 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	3649	0.178864307232902	Illumina PCR Primer Index 2 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	3200	0.15685551744184337	Illumina PCR Primer Index 2 (95% over 23bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2251	0.1103380530504967	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2132	0.10450498849562814	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8830	86.15701	1
TCCGTAC	2090	79.60305	2
CCGTACA	2035	78.290306	3
ATCCGTA	2185	77.08554	1
CGTACAC	2065	76.47015	4
ATAGGGA	1955	74.76293	3
GAATAGG	1170	73.58793	1
AGGGATG	2775	73.332695	5
GTAGGGT	675	72.41062	3
ATAGGGC	955	71.84924	3
AGATAGG	1325	70.30572	1
GAGGGAT	2520	69.37694	4
ATAGCGG	475	69.33392	1
AGTAGGG	3315	69.04276	2
GTAGGGA	1465	68.972115	3
TAGGGTA	690	68.79312	4
TAGCGGG	1190	68.32378	2
AGTAAGG	1270	67.7936	1
ATAAGGG	2725	66.74476	2
GTACGGG	410	66.48396	2