SRR3128179.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128179.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2264424
Sequences flagged as poor quality	0
Sequence length	100
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32361	1.4291051499189198	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	4066	0.17956001172925212	Illumina PCR Primer Index 2 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	4003	0.17677784725828732	Illumina PCR Primer Index 2 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	3514	0.15518295160270337	Illumina PCR Primer Index 2 (95% over 23bp)
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	2688	0.11870568409449819	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2645	0.1168067464397127	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2400	0.10598721794151625	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	10680	85.55729	1
GAATAGG	1445	75.17952	1
ATAGGGC	950	74.215195	3
TAGGGCA	1115	73.771454	4
ATAGGGA	2230	71.663704	3
TACGGGT	165	71.216606	3
GTAGGGA	1685	71.13208	3
AGGGATG	3145	70.69125	5
AGTAGGG	3685	69.89857	2
CGTAGGG	720	69.19881	2
AAGGGAT	3640	67.53447	4
GAGGGAT	2780	67.46109	4
ATAAGGG	3195	67.23115	2
GGTAAGG	1575	67.18269	1
TATAGGG	1815	67.07309	2
CGAAGGG	2440	67.03701	2
ATAGCGG	520	66.92429	1
TAGGGAT	1630	66.61155	4
TAGGGTA	695	66.27756	4
AAGAGGG	8055	66.17177	2