SRR3128177.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128177.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1391875
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16667	1.197449483610238	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	5458	0.39213291423439606	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCTCAGTGTG	5404	0.3882532555006736	No Hit
CCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG	4406	0.3165514144589133	No Hit
CTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTGC	4294	0.3085047148630444	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATGCCGTCTTCTG	3733	0.2681993713515941	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	1880	0.13506960035922766	No Hit
ATCCGTACACCCTGTCTCTTATACACATCTGACGCTCAGTGTGTCGTATG	1786	0.12831612034126627	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1429	0.10266726537943421	No Hit
ATCCGTACACCCACACCTGTCTCTTATACACATCTGACGCTCAGTGTGTC	1401	0.10065559048046699	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	5875	85.86849	1
TAGGGCA	710	76.12176	4
CGGGTAT	125	75.19505	5
CCGTACA	2570	74.97562	3
AGGGTAC	575	74.37772	5
TCCGTAC	2725	74.332726	2
ATAACGG	140	73.950584	1
ATCCGTA	2765	73.69528	1
ATAGGGC	885	73.28332	3
ATAGGGA	1150	73.15172	3
CGTACAC	2620	72.82727	4
AGGGATG	2310	72.224686	5
GCATAGG	310	69.83017	1
AGTAGGG	2015	69.73735	2
CGTAGGG	395	69.008125	2
GGTAAGG	820	68.86751	1
AAGGGAT	2745	68.65487	4
ACGACCA	475	68.269196	7
CGAAGGG	1255	68.154884	2
TATAGGG	935	67.8565	2