SRR3128174.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128174.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1874536
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23113	1.2329984593520744	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3942	0.21029204027023218	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3805	0.2029835649995519	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCAGGACTC	3111	0.16596106983274794	No Hit
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	2802	0.14947699057260036	TruSeq Adapter, Index 8 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	2772	0.14787659452792584	TruSeq Adapter, Index 13 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG	2339	0.12477754494979025	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	7930	87.705376	1
AGGGATG	3930	78.925964	5
TCCGTAC	1805	77.8507	2
CCGTACA	1795	76.18984	3
AGGGTAC	1030	75.74246	5
ATAGCGG	390	74.808685	1
CGTAGGG	585	74.712906	2
CGTACAC	1810	74.51983	4
GGATGGC	3295	73.88272	7
AGGGCAT	1975	73.0533	5
TAGCGGG	920	72.53858	2
AAGGGTA	1700	72.4304	4
CGAAGGG	1990	72.26647	2
GAGGGAT	3330	71.69486	4
TAGGGCA	1075	71.2603	4
ATAGGGA	2065	70.55214	3
ATCCGTA	2010	70.46856	1
TACGGGT	290	69.68495	3
ACGGGTA	230	69.47357	4
AAGGGAT	3805	69.4145	4