SRR3128169.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128169.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1315134
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17260	1.31241379205465	No Hit
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	3898	0.2963956524582286	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	3646	0.27723410694271455	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	3320	0.2524457583789941	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCCTTGAAGG	3063	0.23290402346833097	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1608	0.12226890947994652	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1338	0.10173868214189581	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6285	86.73809	1
ATAGCGG	325	82.5654	1
GTAGGGC	505	78.27907	3
TAGGGCA	760	78.02157	4
GAATAGG	725	75.322815	1
CGTAGGG	395	73.86732	2
AGGGTAA	665	72.08991	5
AGTAGGG	2055	71.44971	2
TAGGGTA	575	70.38633	4
AAGGGTA	860	70.04373	4
AGGGTAC	710	69.50673	5
GAGGGAT	1500	69.336	4
TAGCGGG	755	69.18847	2
TAGAGGG	2025	69.022255	2
TAGACGG	145	68.18014	1
CGAGGGA	580	68.15678	3
GTAGGGT	575	67.931	3
AGGGAAT	1565	67.8719	5
CGAAGGG	1200	67.45357	2
AGGGCAT	1100	67.08152	5