SRR3128165.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128165.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1738065
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

$Per base quality graph$

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22700	1.3060501189541243	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	5262	0.30275047250822035	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCATGCTGTG	4664	0.2683443944846712	No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG	4026	0.23163690655988123	No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	3995	0.2298533138864197	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG	3229	0.18578131427765934	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2493	0.1434353720948296	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1902	0.10943204080399754	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	7805	85.05432	1
CCGTACA	2500	78.39047	3
ACGGGTA	145	77.78763	4
TCCGTAC	2630	77.553474	2
CGTACAC	2535	77.30817	4
AGTAGGG	2790	74.62199	2
ATCCGTA	2755	74.45728	1
ATAGCGG	320	73.512695	1
GGTAAGG	1110	73.32726	1
AGGGAAT	1850	72.90838	5
AGTAAGG	1125	72.34956	1
AGGGATG	2725	71.91787	5
TAGGGCA	1110	70.70673	4
GTAGGGA	1450	70.33298	3
TAAGGGA	1350	69.972855	3
AGGGTAC	945	69.12741	5
TAGAGGG	3305	68.68201	2
AAGGGAT	2845	68.05848	4
GAATAGG	975	68.038826	1
AAGGGTA	1370	67.922226	4