SRR3128164.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128164.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1928042
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26999	1.4003325653694265	No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG	4518	0.23433099486421977	No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	4380	0.2271734744367602	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG	3647	0.189155630427138	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	3549	0.1840727536018406	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2956	0.1533161621997861	No Hit
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCATGCTGTG	2638	0.13682274556259666	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2070	0.10736280641189351	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	9265	85.511086	1
TAGGGTA	855	74.75848	4
CGTAGGG	480	74.414925	2
AGTAGGG	3325	73.21934	2
ACGGGTA	235	71.99831	4
GAATAGG	1210	71.88765	1
GTAGGGT	970	71.22513	3
TAGGGCA	905	70.10886	4
AGTAAGG	1155	70.01876	1
ATGCGGG	835	69.23191	2
ATAGCGG	360	69.22154	1
AGGGATG	3195	68.99056	5
TAGAGGG	3190	68.951355	2
AGGGCAT	1680	68.540054	5
AAGGGAT	3340	68.38762	4
ATAGGGC	1080	67.8873	3
GTAGGGA	1565	67.87061	3
AGGGAAT	1970	67.03904	5
CGAAGGG	1965	66.970436	2
CCGTACA	1600	66.67969	3