SRR3128148.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128148.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1511530
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19439	1.2860479117185897	No Hit
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	3740	0.24743141055751458	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG	3426	0.22665775737166974	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG	3203	0.21190449412185003	Illumina Single End Adapter 1 (95% over 21bp)
ATCCGTACACCCACACACCTGTCTCTTATACACATCTGACGCGTGTGAGA	2241	0.1482603719410134	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2197	0.14534941416974853	No Hit
ATCCGTACACCCACACACCGAATCAAAAAAAAAAAAAAAAAAAAAAAAAA	1742	0.1152474644896231	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	6695	86.20158	1
GTAGGGT	760	74.9135	3
ATAGGGC	840	73.38044	3
TAGGGTA	720	73.193726	4
AGGGTAC	735	72.26118	5
CGTAGGG	530	71.911354	2
GAATAGG	805	71.34101	1
TAGGGCA	810	70.87012	4
TAGAGGG	2705	70.1013	2
GAGGGAT	1760	69.24292	4
AGTAGGG	2660	68.98764	2
ATAGCGG	215	67.87324	1
AAGGGTA	1005	67.41937	4
GGTAAGG	950	67.38925	1
AAGGGAC	1405	67.31441	4
AGGGTAT	770	66.53493	5
AGGGATG	1745	65.990974	5
GATAGGG	1985	65.66101	2
AGGGATC	1170	65.48105	5
AGGGCAT	1365	65.42366	5