SRR3128112.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128112.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1676039
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	66869	3.989704296857054	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCT	4974	0.2967711371871418	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT	4948	0.2952198606357012	No Hit
CGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	4321	0.257810229952883	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG	2673	0.1594831623846462	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTC	2317	0.1382426065264591	No Hit
CGTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	2043	0.1218945382535848	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1856	0.11073727997976181	No Hit
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	1750	0.10441284480850385	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	18150	90.7192	1
ATAGGGC	950	78.16187	3
AGGGATG	2130	71.7076	5
ATAGCGG	345	70.92774	1
TAGGGAT	835	70.353386	4
AGTAGGG	2405	70.18144	2
AGATAGG	745	69.48136	1
GAATAGG	830	69.16934	1
ATAGGGA	1265	68.72942	3
TAGGGCA	610	67.027176	4
AGAGGGC	2330	66.76264	3
AATAGGG	2150	66.696686	2
TAATAGG	510	66.43459	1
GTTTTTT	25200	66.06452	2
AGGGAAT	1625	65.36068	5
GATAGGG	2240	65.27626	2
ACGGGAT	405	64.98221	4
GTAGGGA	1015	64.82215	3
TATAGGG	1390	64.6043	2
AGGGCAT	1240	64.05108	5