SRR3128111.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128111.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1579419
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	61786	3.9119448354109956	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT	5475	0.3466464567033827	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCT	5354	0.3389854117241846	No Hit
CGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	4556	0.288460503514267	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG	2918	0.18475148139917272	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTC	2446	0.15486707453816878	No Hit
CGTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	2269	0.1436604219652923	No Hit
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	1995	0.12631227052479424	Illumina Single End Adapter 1 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1633	0.10339245000851578	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	16700	90.31397	1
ATAGGGC	1035	72.65656	3
TAGGGCA	635	71.79257	4
ATAGGGA	1140	71.32413	3
AGTAGGG	2480	70.68909	2
AGGGCAT	985	70.1417	5
AGGGATG	1930	69.40372	5
GCATAGG	385	68.428215	1
AGATAGG	840	68.326385	1
GAATAGG	790	67.29135	1
AGAGGGC	2445	67.08753	3
TAAGGGA	1130	66.964195	3
ATAGAGG	985	66.38752	1
GTTTTTT	22995	66.0183	2
GTACGGG	300	65.7996	2
AAGGGTA	900	65.275314	4
CGTTTCT	970	64.50417	1
GGGCGAT	780	64.46989	6
TAGAGGG	2720	64.45181	2
GAGGGAT	1600	64.32882	4