SRR3128110.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128110.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1948108
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	85688	4.398524106466377	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCT	5394	0.27688403312342025	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTT	5331	0.2736501261737029	No Hit
CGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	4508	0.23140400840199826	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG	2944	0.151120985078856	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTC	2556	0.13120422481710461	No Hit
CGTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	2240	0.11498335821217304	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2074	0.1064622700589495	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2059	0.1056922922137787	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	23805	90.3562	1
ATAGGGC	1035	75.83444	3
TAGGGCA	720	74.41538	4
ATAGGGA	1615	71.008064	3
GAATAGG	1060	70.99684	1
AGGGATG	2550	70.96138	5
AGAGGGC	2730	69.2076	3
TAGAGGG	2990	69.16269	2
AGGGAAT	1875	68.43258	5
ATAGCGG	425	67.50964	1
AGTAGGG	2730	67.48602	2
AGATAGG	1145	66.9587	1
ATAGAGG	1120	66.773476	1
GAGGGAT	2035	66.74578	4
GTTTTTT	32475	66.529724	2
AGTAAGG	1085	65.89292	1
TATAGGG	1590	65.62151	2
TAGGGAT	1125	65.58998	4
TAGAAGG	1500	65.536	1
AAGGGCG	705	65.332214	4