SRR3128094.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128094.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2295562
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	80244	3.4956145815273123	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT	8317	0.3623077921659271	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	7666	0.3339487236676683	No Hit
CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	6873	0.2994038061267785	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	4000	0.17424926880650576	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTC	3458	0.15063849288322423	No Hit
CGTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	3342	0.14558526408783556	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2840	0.1237169808526191	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2647	0.11530945363270519	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	23060	90.28136	1
ATAGGGC	1390	74.38607	3
AGGGATG	3495	71.270935	5
GAATAGG	1470	70.10823	1
TAGGGCA	935	69.869385	4
AGGGAAT	2630	68.621346	5
AAGGGTA	1725	67.568825	4
AGAGGGC	3250	67.38858	3
AGTAAGG	1255	67.11994	1
TAGAGGG	4035	66.889854	2
TAGGGCG	390	66.2799	4
ATAGGGA	1995	66.19835	3
AGTAGGG	3735	65.967896	2
CGGGATG	885	65.85097	5
AGGGACT	2575	65.706604	5
CGTTTCT	1090	65.6235	1
GAGGGAT	2790	65.359886	4
GTAGGGT	765	65.12206	3
AGGGTAC	970	64.92573	5
ATGCGGG	1060	64.764786	2