SRR3128093.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128093.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2152380
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	73786	3.4281121363328038	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT	8965	0.4165156710246332	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	8282	0.38478335609883013	No Hit
CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	7443	0.3458032503554205	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	4578	0.21269478437822317	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTC	3837	0.17826777799459204	No Hit
CGTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	3544	0.16465494011280535	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2905	0.13496687387914771	TruSeq Adapter, Index 21 (95% over 21bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2568	0.11930978730521562	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	21405	90.096825	1
ATAGGGC	1255	74.13757	3
TAGGGTA	815	73.22562	4
AGGGATG	3120	70.33789	5
ACGGGAT	645	68.48336	4
AGGGTAC	935	68.352486	5
ATAGCGG	435	68.12275	1
AAGGGTA	1495	67.8937	4
AGAGGGC	3150	67.72706	3
AGGGAAT	2225	67.16208	5
TAGGGCA	900	66.83199	4
GTAGGGT	920	66.400665	3
AGGGTAA	1185	66.22548	5
TAGGGTC	590	66.10632	4
AGTAAGG	1025	66.081436	1
ATAGAGG	1310	65.70836	1
AGTAGGG	3315	65.49005	2
ATAGGGA	1895	65.46537	3
AAGGGAT	3040	65.38584	4
AGGGACT	2350	65.18936	5