SRR3128092.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128092.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2668918
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	103488	3.8775263983382033	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT	8721	0.32676163149261234	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	8438	0.3161580835379731	No Hit
CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	7321	0.27430591722937914	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	4808	0.1801479101268754	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTC	4039	0.15133473564942798	No Hit
CGTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	3632	0.13608511014575944	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3261	0.12218434586600262	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	3070	0.11502788770580438	TruSeq Adapter, Index 21 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	29355	90.138145	1
ATAGGGC	1675	74.640175	3
AGGGATG	4160	73.09716	5
GTAGGGT	950	70.748665	3
AGAGGGC	3635	70.72757	3
TAGAGGG	4490	68.983444	2
AGTAGGG	4030	68.92682	2
ATAGAGG	1690	68.76314	1
GAGGGAT	3135	67.165504	4
CGTTTCT	1350	66.56486	1
AGGGTAC	1120	66.30231	5
TAGGGTA	935	65.85148	4
GTTTTTT	40345	65.73946	2
GGGCGAT	1295	65.689865	6
ATAGGGA	2350	65.601204	3
AGGGTAT	1480	65.41766	5
AGGGAAT	3060	65.27653	5
AAGGGTA	1975	65.20626	4
GTAGGGA	2145	65.07812	3
TAGGGCA	1315	65.05062	4