SRR3128079.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128079.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1236445
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12081	0.9770754056994043	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3859	0.3121044607726183	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG	3617	0.29253221938703294	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG	3499	0.2829887297857972	No Hit
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	3392	0.2743348875202698	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	1357	0.10975013041421172	No Hit
AAAGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTT	1291	0.10441224639996118	No Hit
AGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	1241	0.1003683948740138	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	3955	85.414604	1
ACGGGTA	140	83.92507	4
TAAGCGG	265	83.44613	1
AGGGATG	4235	82.56563	5
TACGAGG	235	82.086205	1
TAGGGCA	730	81.1199	4
CGTAGGG	350	80.59415	2
CGCTACG	840	80.56807	3
CGAGGGA	805	80.56806	3
CGAAGGG	940	80.02255	2
AGGGAAT	2825	79.35598	5
AGGGCGA	540	79.2004	5
GGATGGC	3580	79.03022	7
TAGGGCG	155	78.83542	4
AGAGGGC	1485	78.804794	3
CAGGGAT	1475	78.38317	4
ATGGCAC	3305	78.35377	9
GATGACC	1980	78.092705	8
GCGGGAT	780	77.72752	4
TAAGGGA	1645	77.42534	3