SRR3128077.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128077.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1437575
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15888	1.1051945115906996	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4628	0.3219310296854077	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG	4290	0.2984192129106307	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTG	4233	0.2944542023894406	No Hit
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	3833	0.2666295671530181	Illumina Single End Adapter 1 (95% over 21bp)
AAAGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTT	1629	0.11331582700033042	No Hit
CGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	1535	0.10677703771977115	No Hit
AGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	1438	0.10002956367493869	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGCGG	60	86.24606	1
CGTTTTT	5005	85.721275	1
AGGGATG	5010	82.271935	5
CGTAGGG	395	82.09975	2
GGATGGC	4465	81.6827	7
GATGGCA	4230	80.442955	8
CGAAGGG	1110	80.02554	2
ACGGGTA	220	79.04399	4
ATGGCAC	4250	78.73737	9
TAGGGCA	780	78.33189	4
GATGACC	2260	78.193245	8
CGAGGGA	995	77.938255	3
TAGGGCG	285	77.50734	4
TTACGGG	255	77.41034	2
CGCTACG	905	77.37978	3
AGGGAAT	2985	76.67865	5
CAGGGAT	1645	76.570015	4
AGGGTAT	1005	76.22745	5
GCGGGAT	935	75.902336	4
CGGGTAA	180	75.720825	5