Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128060.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2614104 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32468 | 1.2420316865740613 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 3894 | 0.14896117369469616 | No Hit |
GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG | 3094 | 0.11835795362388031 | No Hit |
CTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC | 2974 | 0.11376747061325793 | No Hit |
CCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTG | 2968 | 0.1135379464627268 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 10060 | 0.0 | 86.62731 | 1 |
AGGGTAC | 1445 | 0.0 | 72.850655 | 5 |
GAGGGAT | 3640 | 0.0 | 72.557106 | 4 |
AGGGATG | 4850 | 0.0 | 72.38226 | 5 |
TAAGGGA | 2635 | 0.0 | 70.80352 | 3 |
TAGACGG | 355 | 0.0 | 70.214195 | 1 |
ATAGGGA | 2430 | 0.0 | 70.20133 | 3 |
AAGGGAT | 4420 | 0.0 | 68.89659 | 4 |
AGTAGGG | 4320 | 0.0 | 68.85967 | 2 |
ATAGCGG | 595 | 0.0 | 68.76694 | 1 |
GATAGGG | 3635 | 0.0 | 68.2613 | 2 |
ATAGGGC | 1750 | 0.0 | 68.20884 | 3 |
AGAGGGC | 3820 | 0.0 | 67.5389 | 3 |
AAGGGTA | 1850 | 0.0 | 67.31613 | 4 |
AGGGCAT | 2210 | 0.0 | 67.196724 | 5 |
AGATAGG | 1485 | 0.0 | 67.14085 | 1 |
AAGAGGG | 8760 | 0.0 | 67.0044 | 2 |
AGTTAGG | 825 | 0.0 | 66.697464 | 1 |
TAGGGAT | 1920 | 0.0 | 66.330475 | 4 |
TAGAGGG | 4960 | 0.0 | 66.22783 | 2 |