Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128059.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3282807 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 47171 | 1.4369105463708345 | No Hit |
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC | 5050 | 0.1538317665339449 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 14030 | 0.0 | 85.51078 | 1 |
AGGGTAC | 1680 | 0.0 | 72.45894 | 5 |
AGGGATG | 6290 | 0.0 | 72.18185 | 5 |
ATAGGGA | 3280 | 0.0 | 69.78625 | 3 |
GAATAGG | 1930 | 0.0 | 69.71834 | 1 |
ATAGGGC | 2120 | 0.0 | 69.39421 | 3 |
AGTAGGG | 5685 | 0.0 | 69.035225 | 2 |
AAGGGAT | 6225 | 0.0 | 68.33197 | 4 |
CGTAGGG | 810 | 0.0 | 67.89153 | 2 |
TAGAGGG | 5980 | 0.0 | 67.7518 | 2 |
TAAGGGA | 3320 | 0.0 | 67.38817 | 3 |
AAGGGTA | 2520 | 0.0 | 67.331985 | 4 |
GAGGGAT | 4615 | 0.0 | 66.708984 | 4 |
TAGGGTA | 1200 | 0.0 | 66.58592 | 4 |
GATAGGG | 5175 | 0.0 | 66.39292 | 2 |
TAGGGCA | 2035 | 0.0 | 66.28759 | 4 |
GTAGGGA | 2555 | 0.0 | 66.22567 | 3 |
AAGAGGG | 11320 | 0.0 | 66.05998 | 2 |
AGGGCAT | 2755 | 0.0 | 65.85173 | 5 |
TAGGGAT | 2730 | 0.0 | 65.76813 | 4 |