SRR3128052.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128052.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2118468
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	80540	3.801803945115055	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCT	7903	0.3730526021634502	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTT	7897	0.3727693786264414	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT	7347	0.3468072210672996	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	4714	0.22251929224326258	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTC	3734	0.17625944786515538	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	3514	0.16587458484149867	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2975	0.1404316704335397	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2230	0.10526474792161128	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22840	89.956764	1
ATAGGGC	1360	73.26085	3
ATAGCGG	405	70.86333	1
AGGGAAT	2210	69.53932	5
TAGGGCA	1035	69.474594	4
CGTTTCT	1195	68.89963	1
TAGGGTA	655	68.16434	4
AGTAGGG	2815	68.14614	2
AGGGATG	2530	67.80276	5
GTAGGGA	1380	67.43123	3
ATAGGGA	1590	67.39268	3
GATAGGG	2765	67.167854	2
GAATAGG	1235	66.2871	1
GTAGGGT	805	65.97167	3
GAGGGAT	2310	64.901344	4
TAGAGGG	3310	64.6313	2
AGAGGGC	2890	64.56061	3
AGGGTAC	650	64.35046	5
AGGGCAT	1585	64.34361	5
TAAGGGA	1695	64.32699	3