SRR3128050.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128050.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2428966
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	103706	4.269553381974058	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCT	8355	0.34397352618356947	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTT	8040	0.3310050449450507	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT	7256	0.2987279360847373	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	5210	0.21449456270692963	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTC	4123	0.16974300998861244	No Hit
CGTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	3626	0.1492816284789495	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	3370	0.13874216436129613	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2612	0.10753546982543188	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2518	0.10366551034473104	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	27645	90.21349	1
ATAGGGC	1580	75.5557	3
TAGGGCA	1080	71.36918	4
AGTAGGG	3400	68.42533	2
AGGGATG	2845	67.73034	5
GAATAGG	1430	67.10309	1
CGTTTCT	1250	66.605736	1
GGTAAGG	1320	65.9244	1
TAGAGGG	3870	65.8232	2
GTAGGGA	1555	65.58733	3
AGAGGGC	3465	65.10714	3
AATAGGG	3460	64.793724	2
ATAGCGG	400	64.67718	1
GTTTTTT	38730	64.60724	2
ATAGAGG	1780	64.47898	1
GATAGGG	3040	64.46932	2
ATAGGGT	1075	64.26869	3
AGGGCTC	2080	64.17069	5
TAGGGAT	1335	64.073845	4
ATAGGGA	1995	63.607964	3