Basic Statistics
Measure | Value |
---|---|
Filename | SRR3128038.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2626632 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29023 | 1.1049511313347284 | No Hit |
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT | 3828 | 0.14573796405434794 | No Hit |
GCTGTCTCTTATACACATCTGACGCAACCCATGTCGTATGCCGTCTTCTG | 2789 | 0.10618160442726655 | RNA PCR Primer, Index 14 (95% over 22bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 8590 | 0.0 | 83.69419 | 1 |
CGTAGGG | 735 | 0.0 | 74.81845 | 2 |
ATAGGGC | 1525 | 0.0 | 72.118706 | 3 |
GTAGGGA | 1945 | 0.0 | 69.35283 | 3 |
GAATAGG | 1795 | 0.0 | 69.19977 | 1 |
TAGACGG | 245 | 0.0 | 69.135574 | 1 |
TAGAGGG | 4725 | 0.0 | 68.835815 | 2 |
ATAGAGG | 1840 | 0.0 | 68.78593 | 1 |
TATAGGG | 2030 | 0.0 | 68.30243 | 2 |
ATAGGGA | 2410 | 0.0 | 68.2579 | 3 |
AGTAGGG | 4225 | 0.0 | 68.082405 | 2 |
TAAGAGG | 2080 | 0.0 | 67.861435 | 1 |
AGAGGGC | 3600 | 0.0 | 67.62841 | 3 |
ATAAGGG | 3820 | 0.0 | 67.17992 | 2 |
AGGGATG | 4130 | 0.0 | 67.142204 | 5 |
TAAGGGT | 1150 | 0.0 | 66.61801 | 3 |
TAGGGCA | 1310 | 0.0 | 66.374664 | 4 |
TAGGGAT | 1735 | 0.0 | 66.36949 | 4 |
AAGGGTA | 1615 | 0.0 | 66.35356 | 4 |
GAGGGAT | 3155 | 0.0 | 65.54736 | 4 |