SRR3128034.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128034.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2176034
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	77353	3.5547698243685533	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT	6634	0.3048665599894119	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCT	6224	0.28602494262497735	No Hit
CGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT	6166	0.2833595430953744	Illumina PCR Primer Index 3 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	4010	0.18428020885703073	TruSeq Adapter, Index 14 (95% over 24bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3517	0.16162431285540574	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTC	2983	0.13708425511733732	No Hit
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	2781	0.12780131192803054	Illumina PCR Primer Index 3 (95% over 23bp)
CGTCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTC	2676	0.12297601967616315	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22540	89.87643	1
TAGGGTA	750	75.82292	4
ACGGGTA	255	75.5649	4
AGGGATG	3185	75.55042	5
ATAGGGC	1365	74.02564	3
TAGGGCA	925	73.163956	4
ATAGGGA	1965	70.55631	3
AGTAGGG	3505	70.15679	2
ATAGCGG	455	69.277	1
GAGGGAT	2520	68.63153	4
AGGGACT	2525	67.37885	5
AGGGTAC	985	67.27587	5
CGTTTCT	1070	67.27185	1
AGAGGGC	3490	67.06259	3
GTAGGGC	1195	66.85863	3
ATAGAGG	1550	66.77543	1
GTAGGGT	915	66.77266	3
AGATAGG	1215	66.21335	1
ATAGGGT	945	66.14488	3
TAGAGGG	3715	65.30508	2