SRR3128032.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128032.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2500044
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97075	3.8829316604027766	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT	6899	0.2759551431894799	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCT	6757	0.27027524315572043	No Hit
CGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT	6096	0.24383570849153055	Illumina PCR Primer Index 3 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTG	4522	0.1808768165680284	TruSeq Adapter, Index 14 (95% over 24bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4026	0.16103716574588287	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTC	3127	0.12507779863074409	No Hit
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGC	2938	0.11751793168440236	Illumina PCR Primer Index 3 (95% over 23bp)
CGTCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTC	2803	0.11211802672272968	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	27610	89.98202	1
AGTAGGG	4065	72.49519	2
ATAGGGC	1660	72.19952	3
AGGGATG	3725	71.039795	5
TAGGGCA	1135	70.81129	4
TAGGGCG	395	70.20323	4
GTAGGGT	1115	69.13073	3
TAGGGTC	660	69.07645	4
ATAGGGA	2225	68.86362	3
AGAGGGC	4060	68.41694	3
TAGGGTA	870	68.06965	4
ATGTAGG	790	67.278305	1
GAGGGAT	2780	66.612175	4
CGTTTCT	1135	66.30524	1
TAAGGGA	2140	66.10814	3
GAGGGTA	1430	66.0636	4
AAGGGTA	1580	65.741165	4
GTTTTTT	38055	65.5697	2
AGGGACT	3180	65.33031	5
ATAACGG	245	65.27345	1