SRR3128022.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128022.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2262993
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	77612	3.429617325373963	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT	6831	0.30185687715339815	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	6309	0.27879008021677487	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	5408	0.23897555140471047	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3965	0.17521044033278052	No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	3528	0.15589973101993687	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC	3131	0.13835659235357775	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2927	0.12934198205650657	Illumina Single End Adapter 1 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	2821	0.12465791984332254	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22855	89.91286	1
ATAGGGC	1355	76.652954	3
AGGGATG	3250	72.44865	5
AGGGAAT	2325	70.546974	5
GAATAGG	1270	68.93321	1
TAGGGAT	1470	68.73802	4
TAGGGCA	990	68.36018	4
AGTAGGG	3460	68.2265	2
GGTAAGG	1245	68.04911	1
AGAGGGC	3405	67.35636	3
ATAGGGA	1870	67.35489	3
CGTTTCT	1140	67.29799	1
GTAGGGA	1640	67.05759	3
AGATAGG	1285	66.663414	1
ATAGGGT	935	66.349594	3
GATAGGG	3110	65.77402	2
AGTAAGG	1540	65.40521	1
ATGCGGG	1050	65.38664	2
GTAGGGT	865	65.19902	3
TAGGGTA	700	65.12528	4