SRR3128021.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128021.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2132829
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71276	3.3418525348258115	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT	7220	0.33851752765927323	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	6740	0.31601220726087276	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	5720	0.26818840141427186	No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	3823	0.17924549975642678	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3471	0.16274159813093314	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC	3368	0.15791233146210973	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	3152	0.14778493728282951	Illumina Single End Adapter 1 (95% over 21bp)
CGTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	2895	0.13573521365285263	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	21010	89.556465	1
ATAGGGC	1305	73.102875	3
AGGGATG	2890	73.014244	5
AGTAGGG	3040	71.72875	2
GAATAGG	1320	68.047775	1
ATAGGGA	1605	67.93004	3
CGTTTCT	1145	67.76929	1
TAGGGCA	1050	67.582855	4
GAGGGAT	2330	67.1641	4
GATAGGG	2830	66.423615	2
AAGAGGG	6590	65.82111	2
AGTAAGG	1165	65.79852	1
AATAGGG	2940	65.69668	2
ACGGGAT	575	65.383934	4
AGGGAAT	2310	65.30586	5
AGGGACT	2435	65.23442	5
TAGGGTA	620	65.186195	4
TATAGGG	1565	65.16199	2
AGAGGGC	3150	64.897446	3
GGTAAGG	1120	64.66319	1