SRR3128020.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128020.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2632784
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	99254	3.7699256756346133	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCT	7142	0.27127177922685647	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	6663	0.2530781104716528	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCT	5528	0.20996785152143133	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4459	0.1693644446335134	No Hit
CCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	3818	0.14501759354356453	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTC	3333	0.1265960291463333	No Hit
CTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTGC	2979	0.11315018626670474	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	27930	90.10667	1
ATAGGGC	1740	71.58103	3
AGGGATG	4070	70.44149	5
GAATAGG	1525	70.342896	1
ATAGAGG	1995	70.27949	1
ATAGGGA	2320	69.89281	3
TATAGGG	2005	69.38709	2
AGGGAAT	3085	68.556786	5
TAGAGGG	5005	68.45809	2
GGTAAGG	1355	68.404106	1
GAGGGAT	3025	67.74269	4
TAAGGGA	2175	67.63733	3
ACGGGAT	645	66.310616	4
AGTAGGG	3790	66.22217	2
CGTTTCT	1105	65.99708	1
AGGGACT	3250	65.799286	5
AGAGGGC	3990	65.376465	3
AGATAGG	1385	64.884186	1
TAGGGAT	1790	64.85527	4
AAGAGGG	8765	64.56185	2