SRR3128019.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128019.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2086168
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	78090	3.743226815865261	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCT	5645	0.27059182194339093	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTT	5609	0.26886616993454027	No Hit
CGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT	4904	0.23507215142788118	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3196	0.15319955056352125	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTG	2869	0.13752487814979428	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTC	2479	0.11883031472057859	No Hit
CGTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC	2175	0.10425814220139511	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	23010	90.561264	1
AGGGATG	2830	73.569176	5
ATAGGGC	1215	72.33424	3
TAGGGCA	830	71.34623	4
TAGAGGG	3670	69.31852	2
AGTAGGG	3000	69.281784	2
ATAGGGA	1440	68.865	3
TAGGGTA	605	68.36061	4
GAATAGG	1205	68.34433	1
GAGGGAT	1965	68.16492	4
AGAGGGC	3105	68.11292	3
AGGGACT	2465	67.68462	5
CGTAGGG	745	67.53759	2
ACGGGTA	210	67.13988	4
GTAGGGA	1565	66.96828	3
AGATAGG	1020	66.89895	1
ATAGAGG	1340	66.72679	1
GTTTTTT	31585	66.698364	2
CGTTTCT	1010	66.62944	1
ATAGCGG	410	66.57262	1