SRR3128018.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128018.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1974644
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71918	3.6420742169221385	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTT	6273	0.31767751554204204	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCT	6016	0.3046625113184959	No Hit
CGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT	5510	0.27903763918964636	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTG	3143	0.1591679310295932	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2872	0.14544393824912236	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTC	2774	0.14048101835064955	No Hit
CGTCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTC	2408	0.12194603179104689	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	2095	0.106095073339802	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	20285	90.23812	1
TAGGGCA	790	75.54666	4
ATAGGGC	1245	74.359344	3
AGGGATG	2870	72.53715	5
ATAGAGG	1235	71.957405	1
GTAGGGC	895	71.934326	3
ACGGGTA	220	70.49039	4
AGATAGG	1100	68.39242	1
GGTAAGG	1115	68.31574	1
TAGGGAT	1090	68.119156	4
AGTAAGG	1220	67.831825	1
AGGGAAT	2020	67.69869	5
TAGCGGG	1110	67.31515	2
AGTAGGG	2795	67.2538	2
AGAGGGC	2920	67.11071	3
TAGAGGG	3500	66.865166	2
TATAGGG	1520	66.78037	2
GTTTTTT	27580	66.69069	2
GAGGGAT	2045	66.64128	4
TAAGGGA	1770	65.578636	3