SRR3128016.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128016.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2340522
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

$Per base quality graph$

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	84382	3.6052641248405273	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTT	8268	0.3532545303996288	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCT	7521	0.32133857319008324	No Hit
CGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCT	6596	0.28181747490517073	No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	4686	0.2002117476357838	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3804	0.16252784635222398	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTC	3548	0.1515901153674266	No Hit
CGTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	3276	0.13996877619607934	No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	3201	0.136764362821627	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	24110	90.09569	1
ATAGGGC	1395	73.107635	3
ATAGGGA	1905	70.55833	3
GAATAGG	1345	70.30968	1
TAGGGTA	810	70.20654	4
AGGGATG	3040	68.33228	5
AGTAGGG	3485	68.12767	2
TAGGGCA	895	67.7398	4
CGTAGGG	580	67.279854	2
AGTAAGG	1580	66.998764	1
AGAGGGC	3175	66.90707	3
AGGGCAT	1620	66.43512	5
TAGGGTC	610	66.25915	4
AGATAGG	1320	65.938515	1
TAGGGAT	1455	65.893776	4
GTAGGGT	950	65.796875	3
ATAGGGT	1090	65.53818	3
AGGGAAT	2420	65.4473	5
AAGAGGG	7060	65.394585	2
GTTTTTT	33475	65.35028	2