SRR3128003.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3128003.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1891910
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69609	3.679297641008293	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTT	6608	0.34927665692342663	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCT	6474	0.34219386757298176	No Hit
CGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT	5475	0.2893900872663076	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTG	3341	0.17659402402862714	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTC	2925	0.15460566306008214	No Hit
CGTCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	2641	0.13959437816809467	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	2365	0.12500594637165616	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1899	0.10037475355593026	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	20040	90.02494	1
AGGGATG	3240	73.832016	5
TAGGGCA	895	71.93985	4
CGAGGGA	885	71.16148	3
ACGGGAT	600	70.495804	4
TAGGGTA	635	70.310776	4
GAGGGAT	2295	70.239815	4
ATAGGGC	1175	69.99768	3
ATAGGGA	1640	68.49163	3
GAATAGG	1130	67.840836	1
ATAACGG	160	67.60671	1
TAAGGGA	1530	66.965096	3
CGTTTCT	985	66.84574	1
AGTAGGG	2715	66.819145	2
AAGAGGG	6020	65.8915	2
AGAGGGC	2720	65.659584	3
GGATGGC	2720	65.48507	7
GTAGGGT	725	65.47369	3
TAGAGGG	3240	65.42067	2
AAGGGAT	2920	65.34542	4