SRR3127983.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127983.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1818566
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	73592	4.046704931248027	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCT	5583	0.3070001308723467	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTT	5428	0.2984769318243055	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCT	5212	0.286599441538003	No Hit
CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG	3398	0.18685051848544404	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2973	0.16348045657952473	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTC	2365	0.13004752095882138	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	2169	0.11926979829162097	No Hit
CGTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTC	2010	0.11052664571975941	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	20320	90.4239	1
ATAGGGC	1250	78.579994	3
AGGGATG	2790	74.96034	5
TAGGGTA	460	72.53979	4
TAGGGCA	780	70.496414	4
GAGGGAT	2070	70.155846	4
AGAGGGC	2930	69.774605	3
AGGGAAT	2070	67.88544	5
AGGGTAC	640	67.55906	5
TAGGGAT	1155	67.54635	4
GTAGGGA	1175	67.19658	3
AAGAGGG	5950	67.17453	2
GAATAGG	1045	67.10689	1
AAGGGTA	1045	67.01094	4
AAGGGCG	660	66.93599	4
AGTAAGG	985	66.89427	1
AGTAGGG	2675	66.62207	2
GAGGGCT	2580	66.48887	4
AGTTAGG	510	66.44456	1
AGGGACT	1975	66.391556	5