SRR3127965.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127965.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2446414
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	88590	3.621218649010347	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT	7728	0.3158909326058468	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT	7525	0.3075930729631207	No Hit
CGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT	6953	0.284211911802336	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4205	0.1718842354564681	No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG	4145	0.16943166610393826	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTC	3669	0.14997461590720132	No Hit
CGTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	3215	0.13141684113972535	No Hit
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	2874	0.11747807198618058	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	26120	89.73006	1
TAGGGCA	1070	77.744064	4
AGGGATG	4050	74.15212	5
GAATAGG	1485	72.892555	1
ATAGGGC	1545	72.70213	3
AGTAGGG	3910	72.63585	2
ATAGGGA	1815	70.69094	3
GTAGGGA	1740	69.95653	3
TATAGGG	1825	69.3075	2
ATAGCGG	540	68.85177	1
AGAGGGC	3555	68.21625	3
TAGGGTA	765	68.192924	4
AGATAGG	1425	67.705	1
AGGGAAT	2430	67.11212	5
CGTTTCT	1095	67.04899	1
GTAGGGT	1045	67.01125	3
ATAGAGG	1620	66.81817	1
GGATGGC	3580	66.55837	7
GAGGGAT	2795	66.419106	4
ATGTAGG	815	66.40824	1