SRR3127964.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127964.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2288406
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	81778	3.5735791638371865	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT	8036	0.3511614634815675	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT	7913	0.3457865431221558	No Hit
CGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT	7007	0.30619566632844	No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG	4524	0.19769219273153452	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTC	3831	0.16740910485289762	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3758	0.16421911146885648	No Hit
CGTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	3312	0.14472956284855046	No Hit
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	3096	0.13529067831494937	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	23310	89.83901	1
GAATAGG	1330	75.68576	1
AGGGATG	3475	74.656235	5
ACGGGTA	260	74.11102	4
AGTAGGG	3565	71.84868	2
AGGGAAT	2315	71.664734	5
ATAGGGC	1630	71.50656	3
TAGGGCA	890	70.23183	4
GAGGGAT	2560	69.76152	4
AGATAGG	1195	69.67186	1
AGAGGGC	3250	69.55743	3
AGGGTAC	880	68.89518	5
ATAGGGA	1965	68.88295	3
GGATGGC	2900	66.93055	7
AAGGGTA	1445	66.67428	4
AGTAAGG	1405	65.954124	1
GATAGGG	3050	65.95166	2
CGTTTCT	1085	65.89704	1
ATAGAGG	1720	65.6349	1
GTAGGGT	910	65.59098	3