SRR3127963.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127963.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2827266
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	113823	4.025903469995395	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCT	8377	0.29629330950819627	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT	7959	0.2815087084130039	No Hit
CGCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCT	6679	0.2362352887913624	No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG	4791	0.16945699484944113	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4764	0.1685020086542971	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTC	3884	0.13737653266441854	No Hit
CGTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	3319	0.11739256228455336	No Hit
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	3167	0.1120163437044834	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	31590	89.81456	1
AGGGATG	4335	72.74664	5
TAGGGCA	1155	72.02804	4
ATAGGGC	1785	71.88441	3
AGTAGGG	4285	70.858505	2
ACGGGTA	310	69.74393	4
AGGGAAT	2910	69.44725	5
GCATAGG	685	68.6892	1
ATAGGGA	2290	68.55218	3
GAATAGG	1690	67.37639	1
GTAGGGT	1035	67.20965	3
TAGAGGG	5055	66.666595	2
AGTAAGG	1610	66.340546	1
AGGGCAT	1790	66.16481	5
TAGGGAT	1860	65.700806	4
ATAGAGG	2050	65.41391	1
AGGGACT	3645	64.98492	5
CGTAGGG	820	64.77014	2
TGTAGGG	2105	64.75245	2
GTAGGGA	2035	64.67016	3