SRR3127956.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127956.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2003492
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	81899	4.087812679062357	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTT	6322	0.3155490513563319	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCT	6165	0.3077127335671917	No Hit
CGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT	5819	0.29044288671978724	No Hit
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG	3302	0.164812237832744	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTC	2939	0.1466938724986174	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2426	0.12108857934047153	No Hit
CGTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	2418	0.12068927652319052	No Hit
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	2219	0.11075661894332496	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	23070	89.80093	1
ATAGGGC	1165	76.24612	3
GTACGGG	470	73.03376	2
AGAGGGC	2890	71.8797	3
AGGGATG	2510	71.152756	5
TAGGGTC	575	70.29306	4
GAGGGAT	2075	69.53478	4
GTAGGGA	1280	69.0287	3
TAGGGCA	820	68.204796	4
TAGAGGG	3635	68.171814	2
TAGGGCG	250	67.677505	4
ATAGGGA	1530	67.272026	3
AGTAGGG	2820	67.19772	2
ATAGAGG	1385	66.94141	1
AGATAGG	1005	66.49679	1
GTTTTTT	31560	66.09265	2
AGTAAGG	1005	65.56021	1
GAATAGG	1135	65.100174	1
TGTAGGG	1445	65.081985	2
AGGGTAT	1215	64.98526	5