SRR3127941.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127941.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2436265
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53641	2.2017719747236035	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTT	4736	0.19439592983521908	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCT	3893	0.15979378269605318	TruSeq Adapter, Index 10 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCT	3597	0.147644037081352	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG	3310	0.13586370940763834	RNA PCR Primer, Index 10 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	2855	0.11718758016882401	TruSeq Adapter, Index 10 (95% over 23bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2623	0.10766480657892305	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	16690	88.75066	1
AGGGATG	4200	75.86761	5
ATAGGGA	2105	74.124535	3
AGTAGGG	3935	72.877716	2
ATAGGGC	1420	72.15129	3
TAGGGCA	1065	71.93064	4
TAGGGTA	845	71.74786	4
AAGGGAT	4360	69.41851	4
ACGGGTA	170	69.11416	4
AAGGGTA	1555	68.909706	4
GTAGGGT	1005	68.742805	3
GTAGGGA	1815	68.36018	3
ATAGCGG	475	68.3516	1
GGTAAGG	1420	67.92955	1
AGGGCAT	1790	67.7396	5
TAGGGAT	1995	67.375046	4
ATAAGGG	3365	67.33977	2
GAATAGG	1470	67.21948	1
TATAGGG	2090	66.80667	2
AGAGGGC	3465	66.73257	3