SRR3127939.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127939.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2824693
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69393	2.4566563516814037	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTT	4726	0.16731021742893828	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCT	3792	0.13424467720916927	TruSeq Adapter, Index 10 (95% over 21bp)
CGTTTCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCT	3742	0.13247457334301463	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG	3529	0.12493393087319576	RNA PCR Primer, Index 10 (95% over 22bp)
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	3068	0.10861357322724983	No Hit
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	3003	0.10631243820124878	TruSeq Adapter, Index 10 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	20795	88.32715	1
AGGGATG	4900	76.445465	5
TAGGGCA	1310	71.75435	4
ATAGCGG	735	71.69255	1
AGAGGGC	4100	70.49865	3
AGTAGGG	4475	69.63218	2
TAAGGGA	2600	69.59482	3
GAGGGAT	3850	69.09478	4
TAGGGTA	1000	68.61868	4
AGGGTAG	1215	68.46782	5
ATAGGGC	1705	68.08666	3
GAGGGTA	1445	67.65268	4
ATAGGGA	2640	67.65022	3
GAATAGG	1670	67.332504	1
ACGGGTA	280	67.14157	4
TATAGGG	2495	67.06084	2
TAGAGGG	5040	66.768555	2
AAGGGAT	5195	66.49535	4
AGATAGG	1580	66.10575	1
AGGGAAT	3280	66.05666	5