SRR3127937.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127937.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1663215
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69457	4.176068638149608	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT	7173	0.43127316672829424	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCT	7016	0.4218336174216803	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCT	5882	0.35365241414970405	RNA PCR Primer, Index 16 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTG	3640	0.2188532450705411	RNA PCR Primer, Index 16 (95% over 24bp)
CGTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTC	3354	0.20165763295785571	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC	2816	0.16931064234028673	RNA PCR Primer, Index 16 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	2320	0.1394888814735317	RNA PCR Primer, Index 16 (96% over 25bp)
CGTTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGT	1726	0.10377491785487744	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1668	0.10028769581803916	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	17685	90.80737	1
ATAGGGC	1045	77.79503	3
TAGGGCA	700	73.844246	4
TAGGGTC	505	73.51191	4
TAGGGTA	580	72.918304	4
AGTAGGG	2640	72.62368	2
ATAGCGG	320	72.00814	1
AGGGATG	2025	70.77989	5
GGTAAGG	975	70.418	1
TATAGGG	1215	70.39101	2
ATAGGGA	1375	69.37697	3
AGATAGG	1035	68.607574	1
AGAGGGC	2290	68.333046	3
GTAGGGA	1055	68.14924	3
GAATAGG	960	67.10963	1
AGGGAAT	1835	67.096565	5
AGGGTAC	765	66.95764	5
CGTTTCT	1015	66.71629	1
ATAGAGG	1095	66.56609	1
GTAGGGT	650	66.51146	3