SRR3127916.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127916.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1648750
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	61025	3.7012888551933285	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTT	4100	0.2486732373009856	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCT	3973	0.2409704321455648	RNA PCR Primer, Index 34 (95% over 23bp)
CGTTTCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCT	3581	0.21719484457922666	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	2570	0.1558756633813495	RNA PCR Primer, Index 34 (95% over 24bp)
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1985	0.1203942380591357	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTC	1750	0.10614101592115238	RNA PCR Primer, Index 34 (95% over 22bp)
CGTTTTCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTC	1710	0.10371493555724033	No Hit
CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	1669	0.10122820318423048	RNA PCR Primer, Index 34 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	17635	90.17957	1
ATAGGGC	1000	78.47775	3
TAGGGTC	455	73.32921	4
TACGGGT	175	72.50296	3
AGGGATG	2835	72.43666	5
TAGGGCA	750	70.175705	4
GTAGGGC	860	68.84972	3
TAGGGAT	1030	67.979675	4
TAAGGGA	1350	67.1821	3
GAGGGAT	1960	66.89262	4
AGTAGGG	2755	66.693756	2
TAGGGTA	475	66.28438	4
AAGGGTA	1205	65.906715	4
TATAGGG	1305	65.89776	2
TAGAGGG	3040	65.851555	2
GTTTTTT	24415	65.807045	2
AGATAGG	895	65.69396	1
AGGGCAT	1245	65.67649	5
AGGGACT	1555	65.57818	5
GAATAGG	1015	65.34187	1