SRR3127915.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127915.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2059562
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	83302	4.044646385979155	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTT	3926	0.19062305480485656	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCT	3777	0.18338850687670485	RNA PCR Primer, Index 34 (95% over 23bp)
CGTTTCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCT	3572	0.17343493422387865	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2546	0.12361851694680714	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTG	2462	0.11953997985979542	RNA PCR Primer, Index 34 (95% over 24bp)
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2106	0.10225475125293632	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	23105	90.26827	1
AGGGATG	3660	75.11973	5
ATAGGGA	1945	71.525665	3
ATAGGGC	1250	71.438675	3
AGTAGGG	3280	71.07185	2
TAGGGAT	1405	70.91683	4
TAGGGCA	820	70.498695	4
GTACGGG	430	68.859184	2
AGGGTAC	875	68.75134	5
AGATAGG	1240	68.675255	1
TAGGGTC	510	67.273254	4
GAATAGG	1355	67.01336	1
TAGGGTA	790	66.63167	4
AAGGGAT	3615	66.43584	4
GAGGGAT	2580	66.308846	4
GTTTTTT	31725	66.087654	2
TAGAGGG	3790	65.97238	2
AGAGGGC	2995	65.75169	3
AAGGGTA	1380	65.73067	4
GTAGGGT	795	65.62142	3