SRR3127901.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127901.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1996260
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	73990	3.706431026018655	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT	7708	0.3861220482301904	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT	7301	0.36573392243495334	No Hit
CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT	6940	0.34765010569765464	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	4235	0.21214671435584542	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC	3549	0.17778245318746055	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	3396	0.17011812088605693	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2943	0.14742568603288148	No Hit
CGTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	2777	0.1391101359542344	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	20985	90.02806	1
ATAGGGC	1360	76.02049	3
AGGGATG	2865	74.14326	5
TAGGGTA	770	73.236336	4
TAGGGCA	910	72.81381	4
GTAGGGA	1320	71.20377	3
AGTAGGG	3010	70.25754	2
ATAGCGG	380	69.32623	1
AGTAAGG	1145	68.61264	1
GTAGGGT	715	68.35562	3
ATAGGGA	1610	68.30255	3
GAATAGG	1260	67.577354	1
AGAGGGC	3060	67.57378	3
ACGGGTA	230	67.425186	4
CGTAGGG	595	67.13499	2
AGGGCAT	1345	67.08675	5
ATAGGGT	885	66.90741	3
GATAGGG	2785	66.82161	2
TATAGGG	1495	66.64102	2
AGGGAAT	2020	66.538414	5