SRR3127900.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127900.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2469061
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102687	4.158949495374962	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT	7692	0.3115354379660932	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT	7603	0.30793082876445743	No Hit
CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT	6871	0.2782839306116779	No Hit
CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG	4478	0.181364494437359	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3734	0.15123158156076338	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC	3651	0.14786997972103566	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC	3153	0.12770036868266924	No Hit
CGTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC	2901	0.11749405948253203	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2546	0.10311612390297364	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	28635	89.460045	1
ATAGGGC	1565	75.38305	3
GACCGAT	225	73.11092	8
AGTAGGG	3990	71.73956	2
AGGGTAC	1210	70.69404	5
AGGGATG	3680	70.62753	5
GAATAGG	1465	69.35293	1
TAGGGCA	1195	68.83106	4
GTAGGGT	980	68.584236	3
AGATAGG	1480	68.3322	1
AGGGAAT	2570	68.03095	5
TAGGGTA	895	67.22043	4
AGAGGGC	3825	67.215614	3
AGGGACT	2840	67.18997	5
ATAGGGA	2115	66.891426	3
GTTTTTT	38760	66.2827	2
GAGGGAT	2610	66.27071	4
GATAGGT	625	66.175835	8
AGTAAGG	1495	66.07342	1
CGTTTCT	1240	66.00491	1