SRR3127871.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127871.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2231635
Sequences flagged as poor quality	0
Sequence length	100
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63793	2.858576783389757	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTT	7289	0.32662151292662106	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT	6238	0.2795259977550092	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT	6200	0.27782321033681584	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	4483	0.2008841051516041	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG	4166	0.186679273268254	No Hit
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3155	0.14137616590526675	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	3025	0.13555084052723676	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTC	2856	0.12797791753579774	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG	2303	0.10319787958156239	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	19365	89.5531	1
AGGGATG	4015	75.14746	5
AGGGAAT	2520	74.78399	5
ATAGGGC	1435	71.396866	3
CGTAGGG	650	70.857735	2
GAGGGAT	2565	70.35723	4
GAATAGG	1295	70.09911	1
AGTAGGG	3320	69.929985	2
AAGGGAT	3885	69.92004	4
AGTAAGG	1305	69.56195	1
GTAGGGA	1460	69.53052	3
TAGGGTC	595	69.507324	4
GTAGGGT	795	69.1661	3
TAAGAGG	1495	68.90138	1
AGAGGGC	3115	68.648	3
AGTACGG	350	68.53733	1
GTAGGGC	1115	68.28334	3
TAGGGCA	1035	67.65669	4
ATAGGGA	2045	67.566055	3
AGGGTAC	815	67.46726	5