SRR3127868.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127868.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1988319
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	77704	3.9080248189551074	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT	8265	0.4156777659922779	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTT	8152	0.40999457330539013	No Hit
CGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCT	7221	0.363171100814306	No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG	4001	0.2012252561083005	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTC	3582	0.18015217880028306	No Hit
CGTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	3299	0.16591905021276768	No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	2449	0.12316937070962959	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	22025	90.17306	1
ATAGGGC	1220	73.18945	3
AGGGATG	2650	72.71159	5
ATAGAGG	1390	72.06699	1
AGAGGGC	2710	71.79361	3
CGTTTCT	1290	70.36217	1
TAGGGTA	650	70.13151	4
TAGAGGG	3500	68.34465	2
TAAGGGA	1555	68.3019	3
GAGGGAT	2095	68.1937	4
GTAGGGC	975	67.48048	3
GAATAGG	1155	67.185196	1
TAGGGCA	780	66.877975	4
AGATAGG	1010	66.120865	1
AGTAGGG	2755	66.01523	2
TGTAGGG	1220	65.870514	2
GGTAAGG	1150	65.841484	1
AGGGAAT	1900	65.79512	5
AGGGCAT	1265	65.75797	5
GTTTTTT	30335	65.485176	2