SRR3127856.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127856.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1293353
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10833	0.8375903562291191	No Hit
GCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG	4612	0.3565925157323639	No Hit
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGC	3858	0.2982944331516608	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTG	3792	0.29319141796555154	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	2705	0.20914630421856986	No Hit
AGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT	1571	0.1214672251117831	TruSeq Adapter, Index 15 (95% over 21bp)
AAAGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT	1474	0.11396733915644067	No Hit
AGAGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTT	1323	0.1022922589579179	No Hit
CGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT	1314	0.10159639325072117	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	3610	85.05667	1
CGGGTAT	165	82.60344	5
GGGTACG	255	79.25239	6
TAGCGGG	550	78.61265	2
TAGGGCA	670	78.561646	4
GTACGGG	175	77.88024	2
TACGGGT	140	77.208855	3
ATAGCGG	195	77.16454	1
AGGGATG	2415	77.06588	5
GGGCGAT	540	76.59017	6
AATGCGG	205	75.69418	1
AGGGTAT	955	74.31178	5
CGTAGGG	335	72.950096	2
AAGGGTA	1240	72.76907	4
AGGGAAT	2030	72.697205	5
AAGGGCA	1980	72.631256	4
ACGGGTA	215	72.13446	4
TAAGGGA	1310	72.109436	3
AGAGGGC	1755	72.03482	3
AAGGGAC	1400	71.83781	4