SRR3127847.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127847.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1691322
Sequences flagged as poor quality	0
Sequence length	100
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57086	3.375229554159409	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTT	5008	0.296099737365209	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCT	4747	0.28066802181961803	No Hit
CGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT	4448	0.2629895430911441	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTG	2738	0.1618851998614102	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC	2145	0.12682386913905216	No Hit
CGTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC	2005	0.11854632057053595	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	1898	0.11221990845031284	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1782	0.10536136820782796	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	16480	89.5627	1
AGGGATG	2060	72.31926	5
ATAGGGC	905	71.66258	3
TAGTAGG	765	70.68536	1
AGATAGG	680	70.53171	1
AGGGAAT	1520	70.49417	5
AGTAGGG	2720	70.32139	2
ATAGGGA	1190	68.717	3
TAGAGGG	2920	68.40187	2
GTAGGGA	1030	67.984665	3
TAGGGAT	925	66.556656	4
GAATAGG	1000	66.2998	1
TAGGGCA	680	65.656334	4
GTTTTTT	22625	65.327194	2
ATAAGGG	2140	64.56476	2
AGAGGGC	2330	64.34232	3
GTAGGGC	995	64.23589	3
AAGGGGC	5260	64.06124	4
GTAGGGT	510	63.582977	3
AAGGGTA	925	63.50826	4