SRR3127835.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127835.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1752250
Sequences flagged as poor quality	0
Sequence length	100
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57341	3.272421172777857	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT	5116	0.29196747039520615	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT	5081	0.2899700385219004	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	4063	0.23187330574975032	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG	2838	0.1619631901840491	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTC	2333	0.13314310172635185	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	2199	0.12549579112569553	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	2078	0.11859038379226708	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	17320	89.08962	1
ATAGGGC	1085	74.93122	3
GAATAGG	995	74.67974	1
ATAGCGG	390	71.14693	1
AGGGATG	2520	69.93419	5
TAGGGCA	815	69.77088	4
ACGGGTA	150	68.92517	4
ATGTAGG	580	68.111435	1
AGTAGGG	2725	67.08564	2
TAGTAGG	755	66.65083	1
AGGGTAC	670	66.6358	5
TAGGGTA	460	66.40518	4
AGGGAAT	1725	66.20275	5
AGTAAGG	1015	65.79472	1
ATGCGGG	665	65.72154	2
AGAGGGC	2555	65.47953	3
GATAGGG	2230	65.32858	2
ATAGGGA	1345	64.98859	3
TAGAGGG	2825	64.71092	2
AATAGGG	2690	64.63918	2