SRR3127828.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3127828.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1152054
Sequences flagged as poor quality	0
Sequence length	100
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14362	1.2466429525004903	No Hit
TCCGCTACGACCAACTCATACACCTCCTATGAAAAAACTTCCTACCACTC	9962	0.8647164108626852	No Hit
GCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG	4399	0.3818397401510693	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGC	3969	0.3445151008546474	No Hit
CCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTG	3848	0.3340121209596078	No Hit
AAAGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTT	2237	0.1941749258281296	No Hit
GGTACTGAACCTACGAGTACACCGACTACGGCGGACTAATCTTCAACTCC	2139	0.18566838012801484	No Hit
TCCGCTACGACCAACTCATACACCTGTCTCTTATACACATCTGACGCACG	1695	0.14712852001729085	No Hit
TAGACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCT	1421	0.12334491265166389	No Hit
AGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	1405	0.12195608886389007	No Hit
CGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	1375	0.11935204426181412	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	215	0.0	91.93127	1
CGTTTTT	4110	0.0	85.418015	1
CGTAGGG	215	0.0	85.25731	2
AGGGATG	3305	0.0	85.03864	5
GGATGGC	2925	0.0	83.71407	7
TACGAGG	260	0.0	83.26011	1
GATGGCA	2745	0.0	83.21096	8
GCTACGA	1645	0.0	83.14432	4
CGCTACG	1655	0.0	82.35794	3
ACGGGTA	120	0.0	82.25144	4
CGAAGGG	925	0.0	81.80684	2
AGCGGGA	795	0.0	81.58634	3
GTTACGG	35	3.8306098E-8	80.67439	1
ACGACCA	1640	0.0	80.528404	7
TCCGCTA	1695	0.0	80.51574	1
GAGGGTA	790	0.0	80.31786	4
CGAGGGA	660	0.0	79.75897	3
AAGGGAT	2950	0.0	79.02511	4
ATGGCAC	2865	0.0	78.74142	9
CTACGAC	1740	0.0	78.60142	5