Basic Statistics
Measure | Value |
---|---|
Filename | SRR3127798.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3352504 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29611 | 0.8832502511555542 | No Hit |
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG | 4245 | 0.12662177285992798 | TruSeq Adapter, Index 15 (95% over 21bp) |
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG | 4195 | 0.1251303503291868 | TruSeq Adapter, Index 15 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC | 3751 | 0.11188651825620492 | TruSeq Adapter, Index 21 (95% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 10430 | 0.0 | 82.704056 | 1 |
ATAGGGC | 2115 | 0.0 | 75.55154 | 3 |
TAGGGCA | 1920 | 0.0 | 75.144806 | 4 |
CGTAGGG | 950 | 0.0 | 73.711876 | 2 |
TAGGGCG | 720 | 0.0 | 68.53598 | 4 |
TAGCGGG | 1780 | 0.0 | 68.11997 | 2 |
GGTAAGG | 2195 | 0.0 | 67.92607 | 1 |
AGTAGGG | 5440 | 0.0 | 67.6453 | 2 |
AGGGATG | 4030 | 0.0 | 67.63706 | 5 |
GAATAGG | 1760 | 0.0 | 67.34411 | 1 |
ATAGCGG | 800 | 0.0 | 66.4355 | 1 |
AAGAGGG | 11985 | 0.0 | 66.38863 | 2 |
CGAAGGG | 3550 | 0.0 | 66.32606 | 2 |
AGTAAGG | 1935 | 0.0 | 65.87188 | 1 |
AATAGGG | 4905 | 0.0 | 65.63362 | 2 |
GTACGGG | 835 | 0.0 | 65.28994 | 2 |
TAGGGAT | 2110 | 0.0 | 65.25998 | 4 |
TATAGGG | 2825 | 0.0 | 65.21423 | 2 |
GGATAGG | 2025 | 0.0 | 65.03464 | 1 |
AAGGGCA | 5695 | 0.0 | 64.44944 | 4 |